Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72406.1Major facilitator superfamily protein; Identified by match to protein family HMM PF07690. (403 aa)    
Predicted Functional Partners:
ABK75439.1
Conserved hypothetical protein.
     
 0.778
ABK71052.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.724
ABK73390.1
MFS permease; Identified by match to protein family HMM PF07690.
  
     0.487
ABK70218.1
Chloramphenicol resistance protein; Identified by match to protein family HMM PF07690.
  
     0.460
ABK71413.1
Identified by match to protein family HMM PF07690.
  
     0.446
ABK72116.1
Identified by match to protein family HMM PF07690.
  
     0.441
ABK73232.1
Two-component system response regulator; Identified by match to protein family HMM PF00196.
     
 0.421
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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