ABK70089.1 protein (Mycolicibacterium smegmatis)

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ABK70089.1

ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665. (309 aa)

Predicted Functional Partners:

ABK71031.1

0.917

ABK72007.1

0.677

ABK73160.1

0.659

ABK74587.1

0.654

ABK70202.1

0.637

ABK70227.1

0.637

ABK73016.1

0.637

ABK74886.1

0.623

ABK75530.1

0.622

ABK75552.1

0.603

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70089.1	ABK70202.1	MSMEG_2818	MSMEG_0724	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	IS1137, transposase orfA; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF01527.	0.637
ABK70089.1	ABK70227.1	MSMEG_2818	MSMEG_1866	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	Identified by match to protein family HMM PF00665.	0.637
ABK70089.1	ABK71031.1	MSMEG_2818	MSMEG_2819	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	ISMsm1, transposase orfA; Similar at the protein level to ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF01527.	0.917
ABK70089.1	ABK72007.1	MSMEG_2818	MSMEG_1716	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	IS3 family protein element, transposase orfA; Identified by similarity to GP:15619022; match to protein family HMM PF01527.	0.677
ABK70089.1	ABK73016.1	MSMEG_2818	MSMEG_2676	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	IS1137, transposase orfA; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF01527.	0.637
ABK70089.1	ABK73160.1	MSMEG_2818	MSMEG_5096	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	ISMsm1, transposase orfA; Identified by similarity to GP:16551202; match to protein family HMM PF01527.	0.659
ABK70089.1	ABK74587.1	MSMEG_2818	MSMEG_1728	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	ISMsm1, transposase orfA; Identified by similarity to GP:16551202; match to protein family HMM PF01527.	0.654
ABK70089.1	ABK74886.1	MSMEG_2818	MSMEG_1720	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	IS1137, transposase orfA; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF01527.	0.623
ABK70089.1	ABK75530.1	MSMEG_2818	MSMEG_1862	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	Transposase; Identified by match to protein family HMM PF00665.	0.622
ABK70089.1	ABK75552.1	MSMEG_2818	MSMEG_1726	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	Transposase; Identified by match to protein family HMM PF00665.	0.603
ABK70202.1	ABK70089.1	MSMEG_0724	MSMEG_2818	IS1137, transposase orfA; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF01527.	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	0.637
ABK70227.1	ABK70089.1	MSMEG_1866	MSMEG_2818	Identified by match to protein family HMM PF00665.	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	0.637
ABK70227.1	ABK75530.1	MSMEG_1866	MSMEG_1862	Identified by match to protein family HMM PF00665.	Transposase; Identified by match to protein family HMM PF00665.	0.518
ABK71031.1	ABK70089.1	MSMEG_2819	MSMEG_2818	ISMsm1, transposase orfA; Similar at the protein level to ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF01527.	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	0.917
ABK71031.1	ABK72007.1	MSMEG_2819	MSMEG_1716	ISMsm1, transposase orfA; Similar at the protein level to ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF01527.	IS3 family protein element, transposase orfA; Identified by similarity to GP:15619022; match to protein family HMM PF01527.	0.774
ABK72007.1	ABK70089.1	MSMEG_1716	MSMEG_2818	IS3 family protein element, transposase orfA; Identified by similarity to GP:15619022; match to protein family HMM PF01527.	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	0.677
ABK72007.1	ABK71031.1	MSMEG_1716	MSMEG_2819	IS3 family protein element, transposase orfA; Identified by similarity to GP:15619022; match to protein family HMM PF01527.	ISMsm1, transposase orfA; Similar at the protein level to ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF01527.	0.774
ABK72007.1	ABK73160.1	MSMEG_1716	MSMEG_5096	IS3 family protein element, transposase orfA; Identified by similarity to GP:15619022; match to protein family HMM PF01527.	ISMsm1, transposase orfA; Identified by similarity to GP:16551202; match to protein family HMM PF01527.	0.774
ABK72007.1	ABK74587.1	MSMEG_1716	MSMEG_1728	IS3 family protein element, transposase orfA; Identified by similarity to GP:15619022; match to protein family HMM PF01527.	ISMsm1, transposase orfA; Identified by similarity to GP:16551202; match to protein family HMM PF01527.	0.774
ABK73016.1	ABK70089.1	MSMEG_2676	MSMEG_2818	IS1137, transposase orfA; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF01527.	ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.	0.637

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