Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73389.1Hypothetical protein; Identified by Glimmer2; putative. (407 aa)    
Predicted Functional Partners:
ABK71281.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
ABK74447.1
4Fe-4S ferredoxin, iron-sulfur binding protein; Identified by match to protein family HMM PF00037.
   
    0.692
ABK74921.1
IS1096, tnpA protein; Identified by similarity to GP:150005; match to protein family HMM PF01610.
       0.572
ABK71058.1
Conserved hypothetical protein.
  
  
 0.565
ABK75216.1
Integral membrane protein.
 
  
 0.560
ABK75409.1
Conserved hypothetical protein.
   
  
 0.482
ABK69628.1
Conserved hypothetical protein.
  
    0.401
ABK73558.1
Conserved hypothetical protein.
  
    0.401
ABK73328.1
ATPase.
  
    0.401
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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