Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK73121.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (537 aa)    
Predicted Functional Partners:
oppC
ABC transporter, permease protein OppC; Identified by match to protein family HMM PF00528.
 0.980
ABK75513.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 0.977
ABK74409.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 
 0.972
ABK70874.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
 
 0.972
ABK69993.1
Inner membrane ABC transporter permease protein YddQ; Identified by match to protein family HMM PF00528.
 0.953
ABK71338.1
Oligopeptide ABC transporter integral membrane protein; Identified by match to protein family HMM PF00528.
 0.943
ABK72524.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 0.923
ABK72058.1
Dipeptide transport system permease protein DppB; Identified by match to protein family HMM PF00528.
 
 0.922
ABK73087.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 0.915
ABK72814.1
Peptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.915
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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