ABK73222.1 protein (Mycolicibacterium smegmatis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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textmining

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co-expression

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gene neighborhood

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gene fusions

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[Homology]

Score

ABK73222.1

Conserved hypothetical protein. (190 aa)

Predicted Functional Partners:

ABK72967.1

0.947

ABK72685.1

0.778

ABK70745.1

0.775

ABK74488.1

0.774

ABK73948.1

0.768

ABK72680.1

0.759

ABK75111.1

0.753

pks

0.752

ABK75818.1

0.746

ABK75309.1

0.737

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70745.1	ABK72680.1	MSMEG_6540	MSMEG_5893	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein.	0.782
ABK70745.1	ABK72685.1	MSMEG_6540	MSMEG_4771	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein.	0.786
ABK70745.1	ABK72967.1	MSMEG_6540	MSMEG_2864	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein.	0.786
ABK70745.1	ABK73222.1	MSMEG_6540	MSMEG_2865	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein.	0.775
ABK70745.1	ABK75111.1	MSMEG_6540	MSMEG_0352	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein.	0.759
ABK70745.1	ABK75309.1	MSMEG_6540	MSMEG_0351	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.892
ABK70745.1	ABK75818.1	MSMEG_6540	MSMEG_0139	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Mce-family protein mce1f; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.929
ABK72680.1	ABK70745.1	MSMEG_5893	MSMEG_6540	Conserved hypothetical protein.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.782
ABK72680.1	ABK72685.1	MSMEG_5893	MSMEG_4771	Conserved hypothetical protein.	Conserved hypothetical protein.	0.766
ABK72680.1	ABK72967.1	MSMEG_5893	MSMEG_2864	Conserved hypothetical protein.	Conserved hypothetical protein.	0.749
ABK72680.1	ABK73222.1	MSMEG_5893	MSMEG_2865	Conserved hypothetical protein.	Conserved hypothetical protein.	0.759
ABK72680.1	ABK73948.1	MSMEG_5893	MSMEG_5818	Conserved hypothetical protein.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.779
ABK72680.1	ABK74488.1	MSMEG_5893	MSMEG_0134	Conserved hypothetical protein.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.782
ABK72680.1	ABK75111.1	MSMEG_5893	MSMEG_0352	Conserved hypothetical protein.	Conserved hypothetical protein.	0.755
ABK72680.1	ABK75309.1	MSMEG_5893	MSMEG_0351	Conserved hypothetical protein.	Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.737
ABK72680.1	ABK75818.1	MSMEG_5893	MSMEG_0139	Conserved hypothetical protein.	Mce-family protein mce1f; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.785
ABK72680.1	pks	MSMEG_5893	MSMEG_0408	Conserved hypothetical protein.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.752
ABK72685.1	ABK70745.1	MSMEG_4771	MSMEG_6540	Conserved hypothetical protein.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.786
ABK72685.1	ABK72680.1	MSMEG_4771	MSMEG_5893	Conserved hypothetical protein.	Conserved hypothetical protein.	0.766
ABK72685.1	ABK73222.1	MSMEG_4771	MSMEG_2865	Conserved hypothetical protein.	Conserved hypothetical protein.	0.778