ABK71075.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK71075.1

Biphenyl-2,3-diol 1,2-dioxygenase 1; Identified by match to protein family HMM PF00903. (300 aa)

Predicted Functional Partners:

ABK73174.1

0.997

ABK71346.1

0.984

ABK74305.1

0.982

ABK70656.1

0.971

ABK74830.1

0.948

ABK73895.1

0.943

ABK74660.1

0.901

ABK73848.1

0.852

ABK72155.1

0.817

ABK70591.1

0.805

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70591.1	ABK70656.1	MSMEG_2870	MSMEG_2077	Oxygenase KshA; Identified by match to protein family HMM PF00355.	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	0.588
ABK70591.1	ABK71075.1	MSMEG_2870	MSMEG_2891	Oxygenase KshA; Identified by match to protein family HMM PF00355.	Biphenyl-2,3-diol 1,2-dioxygenase 1; Identified by match to protein family HMM PF00903.	0.805
ABK70591.1	ABK71346.1	MSMEG_2870	MSMEG_6038	Oxygenase KshA; Identified by match to protein family HMM PF00355.	Pigment production hydroxylase; Identified by match to protein family HMM PF08028.	0.791
ABK70591.1	ABK72155.1	MSMEG_2870	MSMEG_2893	Oxygenase KshA; Identified by match to protein family HMM PF00355.	Oxidoreductase, NAD/FAD-binding; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	0.973
ABK70591.1	ABK73174.1	MSMEG_2870	MSMEG_2892	Oxygenase KshA; Identified by match to protein family HMM PF00355.	Pigment production hydroxylase; Identified by match to protein family HMM PF08028.	0.776
ABK70591.1	ABK73848.1	MSMEG_2870	MSMEG_2900	Oxygenase KshA; Identified by match to protein family HMM PF00355.	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; Identified by match to protein family HMM PF00561.	0.602
ABK70591.1	ABK73895.1	MSMEG_2870	MSMEG_6036	Oxygenase KshA; Identified by match to protein family HMM PF00355.	Biphenyl-2,3-diol 1,2-dioxygenase; Identified by match to protein family HMM PF00903.	0.849
ABK70591.1	ABK74305.1	MSMEG_2870	MSMEG_6037	Oxygenase KshA; Identified by match to protein family HMM PF00355.	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; Identified by match to protein family HMM PF00561.	0.719
ABK70591.1	ABK74660.1	MSMEG_2870	MSMEG_3911	Oxygenase KshA; Identified by match to protein family HMM PF00355.	Oxidoreductase.	0.508
ABK70656.1	ABK70591.1	MSMEG_2077	MSMEG_2870	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	Oxygenase KshA; Identified by match to protein family HMM PF00355.	0.588
ABK70656.1	ABK71075.1	MSMEG_2077	MSMEG_2891	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	Biphenyl-2,3-diol 1,2-dioxygenase 1; Identified by match to protein family HMM PF00903.	0.971
ABK70656.1	ABK71346.1	MSMEG_2077	MSMEG_6038	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	Pigment production hydroxylase; Identified by match to protein family HMM PF08028.	0.947
ABK70656.1	ABK73174.1	MSMEG_2077	MSMEG_2892	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	Pigment production hydroxylase; Identified by match to protein family HMM PF08028.	0.950
ABK70656.1	ABK73848.1	MSMEG_2077	MSMEG_2900	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; Identified by match to protein family HMM PF00561.	0.566
ABK70656.1	ABK73895.1	MSMEG_2077	MSMEG_6036	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	Biphenyl-2,3-diol 1,2-dioxygenase; Identified by match to protein family HMM PF00903.	0.972
ABK70656.1	ABK74305.1	MSMEG_2077	MSMEG_6037	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; Identified by match to protein family HMM PF00561.	0.469
ABK70656.1	ABK74660.1	MSMEG_2077	MSMEG_3911	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	Oxidoreductase.	0.822
ABK70656.1	ABK74830.1	MSMEG_2077	MSMEG_6035	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	Nitrilotriacetate monooxygenase component B; Identified by match to protein family HMM PF01613.	0.953
ABK71075.1	ABK70591.1	MSMEG_2891	MSMEG_2870	Biphenyl-2,3-diol 1,2-dioxygenase 1; Identified by match to protein family HMM PF00903.	Oxygenase KshA; Identified by match to protein family HMM PF00355.	0.805
ABK71075.1	ABK70656.1	MSMEG_2891	MSMEG_2077	Biphenyl-2,3-diol 1,2-dioxygenase 1; Identified by match to protein family HMM PF00903.	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.	0.971