STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74354.1Putative oxidoreductase YeiQ; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125. (483 aa)    
Predicted Functional Partners:
ABK70442.1
PTS system, Fru family protein, IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
  
 
 0.988
ABK69998.1
Starvation-sensing protein RspA; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746.
 
  
 0.940
ABK74739.1
2-Keto-3-deoxy-gluconate kinase; Identified by match to protein family HMM PF00294.
 
  
 0.878
ABK69530.1
Fructokinase; Identified by match to protein family HMM PF00294.
 
  
 0.842
xylA
Xylose isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR02631; Belongs to the xylose isomerase family.
    
 0.763
ABK70755.1
Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107.
    
 0.758
ABK74292.1
Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.
    
 0.745
ABK75059.1
Phosphatase YfbT; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.
    
 0.740
ABK73050.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
   
 0.719
manA
Mannose-6-phosphate isomerase, class I; Identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218.
    
 0.693
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.