ABK73050.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK73050.1

Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. (235 aa)

Predicted Functional Partners:

ABK75212.1

0.774

ABK70557.1

0.773

ABK69589.1

0.772

ABK69897.1

0.772

ABK73782.1

0.771

ABK75425.1

0.770

ABK73942.1

0.757

ABK76215.1

0.735

ABK71491.1

0.727

ABK74354.1

0.719

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69589.1	ABK71491.1	MSMEG_1995	MSMEG_5201	Transcriptional regulator MdcY family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.757
ABK69589.1	ABK73050.1	MSMEG_1995	MSMEG_2910	Transcriptional regulator MdcY family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.772
ABK69589.1	ABK75425.1	MSMEG_1995	MSMEG_3980	Transcriptional regulator MdcY family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.771
ABK69589.1	ABK76215.1	MSMEG_1995	MSMEG_5375	Transcriptional regulator MdcY family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.712
ABK69897.1	ABK71491.1	MSMEG_6789	MSMEG_5201	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.766
ABK69897.1	ABK73050.1	MSMEG_6789	MSMEG_2910	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.772
ABK69897.1	ABK73782.1	MSMEG_6789	MSMEG_6300	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.773
ABK69897.1	ABK73942.1	MSMEG_6789	MSMEG_4121	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.784
ABK69897.1	ABK75425.1	MSMEG_6789	MSMEG_3980	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.767
ABK69897.1	ABK76215.1	MSMEG_6789	MSMEG_5375	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.763
ABK70557.1	ABK71491.1	MSMEG_2209	MSMEG_5201	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.763
ABK70557.1	ABK73050.1	MSMEG_2209	MSMEG_2910	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.773
ABK70557.1	ABK73942.1	MSMEG_2209	MSMEG_4121	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.777
ABK70557.1	ABK75425.1	MSMEG_2209	MSMEG_3980	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.770
ABK70557.1	ABK76215.1	MSMEG_2209	MSMEG_5375	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.742
ABK71491.1	ABK69589.1	MSMEG_5201	MSMEG_1995	Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator MdcY family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.757
ABK71491.1	ABK69897.1	MSMEG_5201	MSMEG_6789	Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.766
ABK71491.1	ABK70557.1	MSMEG_5201	MSMEG_2209	Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.763
ABK71491.1	ABK73050.1	MSMEG_5201	MSMEG_2910	Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.727
ABK71491.1	ABK73782.1	MSMEG_5201	MSMEG_6300	Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.759

page 1 of 4

Server load: medium (66%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About