Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72508.1ABC transporter, permease protein OpuCB; Identified by match to protein family HMM PF00528. (215 aa)    
Predicted Functional Partners:
ABK73933.1
Permease binding-protein component; Identified by match to protein family HMM PF04069.
 
 0.999
ABK69926.1
Glycine betaine/carnitine/choline transport ATP-binding protein opuCA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.
 
 0.995
ABK70794.1
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.975
ABK72196.1
Glycine/betaine ABC transporter substrate-binding protein; Identified by match to protein family HMM PF04069.
 
 
 0.973
ABK74826.1
Permease membrane component; Identified by match to protein family HMM PF00528.
 
 
 
0.969
ABK75950.1
ABC transporter, permease protein ProZ; Identified by match to protein family HMM PF00528.
  
  
 
0.830
ABK75366.1
Lipoprotein LpqZ; Identified by match to protein family HMM PF04069.
  
 
 0.824
ABK74713.1
Amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
  
0.819
ABK71509.1
Conserved hypothetical protein.
       0.529
ABK74936.1
ABC proline/glycine betaine family protein transporter, periplasmic ligand binding protein; Identified by match to protein family HMM PF04069.
 
 
 0.491
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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