Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70053.1[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (161 aa)    
Predicted Functional Partners:
ABK71196.1
Carbon-monoxide dehydrogenase; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 0.989
ABK70166.1
Carbon monoxide dehydrogenase, medium chain; Identified by match to protein family HMM PF00941.
 
 0.975
ABK74659.1
Carbon-monoxide dehydrogenase; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 0.955
ABK73221.1
Nicotine dehydrogenase; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 0.948
ABK76221.1
Oxidoreductase; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 0.947
ABK70147.1
Carbon-monoxide dehydrogenase, large subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02416.
 0.930
ABK71665.1
Carbon monoxide dehydrogenase medium chain; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.
 0.913
ABK70154.1
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 0.904
ABK75536.1
Nicotine dehydrogenase chain A; Identified by match to protein family HMM PF00941.
 
 0.903
ABK75483.1
Carbon monoxide dehydrogenase medium chain; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.
 
 0.891
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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