STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75464.1Carbohydrate kinase, fggy; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family. (495 aa)    
Predicted Functional Partners:
ABK74006.1
L-ribulose-5-phosphate 4-epimerase UlaF; Identified by match to protein family HMM PF00596.
  
 
 0.944
xylA
Xylose isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR02631; Belongs to the xylose isomerase family.
  
 
 0.944
ABK71633.1
2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107.
 
 
 0.938
rpe
Ribulose-phosphate 3-epimerase; Identified by similarity to SP:P46969; match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.
 
 0.929
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
 
 
0.928
ABK75701.1
Xylulose kinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
  
 
 
0.924
ABK70282.1
Estradiol 17-beta-dehydrogenase 8; Identified by match to protein family HMM PF00106.
 
  
 0.830
ABK71755.1
Identified by match to protein family HMM PF01547.
 
  
 0.699
ABK74041.1
Conserved hypothetical protein; Identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259.
 
    0.687
rhaU
L-rhamnose 1-epimerase; Identified by match to protein family HMM PF05336.
  
  
 0.650
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.