Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK72041.1Cytochrome aa3 controlling protein; Identified by match to protein family HMM PF02628. (320 aa)    
Predicted Functional Partners:
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 0.998
ABK72590.1
Conserved hypothetical protein.
 
 0.980
ABK70509.1
ABC transporter efflux protein, DrrB family protein; Identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025.
 
   
 0.937
ABK75074.1
Ubiquinol-cytochrome c reductase cytochrome c subunit; Identified by match to protein family HMM PF00034.
 
 
 0.882
ABK74914.1
Cytochrome c oxidase subunit 2; Identified by match to protein family HMM PF00116.
 
 
 0.881
ABK73947.1
Conserved hypothetical protein; Catalyzes the addition of alpha-(1->6)-mannose residue.
 
   
 0.877
ctaD
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.846
ABK75942.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Identified by match to protein family HMM PF00355.
 
  
 0.790
ABK75719.1
ABC transporter, ATP-binding subunit; Identified by match to protein family HMM PF00005.
 
   
 0.788
ABK71560.1
Conserved hypothetical protein.
     
 0.781
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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