Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70509.1ABC transporter efflux protein, DrrB family protein; Identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025. (261 aa)    
Predicted Functional Partners:
ABK75719.1
ABC transporter, ATP-binding subunit; Identified by match to protein family HMM PF00005.
 
 
 0.963
ABK72041.1
Cytochrome aa3 controlling protein; Identified by match to protein family HMM PF02628.
 
   
 0.937
ABK73947.1
Conserved hypothetical protein; Catalyzes the addition of alpha-(1->6)-mannose residue.
 
  
 0.937
ABK72979.1
Identified by match to protein family HMM PF01022.
 
     0.784
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
     
 0.742
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
     
 0.738
sufD
FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.
     
 0.738
ABK74166.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
    0.727
ABK73018.1
SUF system FeS assembly protein, NifU family protein; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.
     
 0.727
ABK72929.1
Conserved protein, DUF59; Identified by match to protein family HMM PF01883.
       0.727
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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