Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK70416.1DNA-binding protein. (267 aa)    
Predicted Functional Partners:
ABK72742.1
Identified by match to protein family HMM PF00501.
     
 0.870
ABK70291.1
enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.
      
 0.824
ABK75274.1
Hydrolase; Identified by match to protein family HMM PF00795.
     
 0.585
ABK70485.1
Aliphatic amidase; Identified by match to protein family HMM PF00795.
   
 
 0.559
ABK75339.1
Allophanate hydrolase subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.
  
  
 0.557
ABK73152.1
Allophanate hydrolase subunit 1; Identified by match to protein family HMM PF02682.
  
  
 0.546
ABK74677.1
Dipeptide transport system permease protein DppB; Identified by match to protein family HMM PF00528.
      
 0.543
ABK76140.1
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
   
  
 0.543
ABK72858.1
Transcriptional regulator, CadC; Identified by match to protein family HMM PF00486; match to protein family HMM PF00561.
   
  
 0.539
ABK71129.1
Transthyretin; Identified by match to protein family HMM PF00576; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
   
  
 0.522
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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