Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
trxThioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family. (124 aa)    
Predicted Functional Partners:
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.
 
 0.992
ABK72676.1
Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.
  
 0.985
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.943
ABK73212.1
Putative cystathionine gamma-synthase; Identified by match to protein family HMM PF01053.
  
 
 0.942
ABK74166.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.940
ABK74617.1
Cysteine desulphurase, SufS; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.940
ABK72488.1
Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.
    
 0.939
ABK75295.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF03486; match to protein family HMM PF07992.
  
 0.930
ABK72744.1
Methyltransferase; Identified by match to protein family HMM PF03848; match to protein family HMM PF05724; match to protein family HMM PF07992.
  
 0.769
ribBA
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.752
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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