ABK71832.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK71832.1

Invasin 1; Identified by match to protein family HMM PF00877. (229 aa)

Predicted Functional Partners:

ABK74821.1

0.819

ripA

0.725

ftsE

0.581

ABK72323.1

0.499

ABK70830.1

0.478

ABK75913.1

0.436

ABK72529.1

0.427

moxR

0.423

nnrD

0.416

ABK70790.1

0.402

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70790.1	ABK71832.1	MSMEG_6201	MSMEG_3146	Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793.	Invasin 1; Identified by match to protein family HMM PF00877.	0.402
ABK70790.1	ABK72323.1	MSMEG_6201	MSMEG_6935	Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	0.792
ABK70790.1	ABK74821.1	MSMEG_6201	MSMEG_2090	Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793.	Putative cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.489
ABK70790.1	ABK75913.1	MSMEG_6201	MSMEG_3144	Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793.	Putative membrane protein.	0.485
ABK70790.1	ripA	MSMEG_6201	MSMEG_3145	Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793.	Secreted cell wall-associated hydrolase; Peptidoglycan endopeptidase that cleaves the bond between D- glutamate and meso-diaminopimelate. Binds and degrades high-molecular weight peptidoglycan. Required for normal separation of daughter cells after cell division and for cell wall integrity (By similarity).	0.630
ABK70830.1	ABK71832.1	MSMEG_3477	MSMEG_3146	Possible inv protein; Identified by match to protein family HMM PF00877.	Invasin 1; Identified by match to protein family HMM PF00877.	0.478
ABK70830.1	ABK72323.1	MSMEG_3477	MSMEG_6935	Possible inv protein; Identified by match to protein family HMM PF00877.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	0.419
ABK70830.1	ABK74821.1	MSMEG_3477	MSMEG_2090	Possible inv protein; Identified by match to protein family HMM PF00877.	Putative cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.618
ABK70830.1	ftsE	MSMEG_3477	MSMEG_2089	Possible inv protein; Identified by match to protein family HMM PF00877.	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	0.527
ABK70830.1	nnrD	MSMEG_3477	MSMEG_1573	Possible inv protein; Identified by match to protein family HMM PF00877.	Carbohydrate kinase family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repa [...]	0.416
ABK70830.1	ripA	MSMEG_3477	MSMEG_3145	Possible inv protein; Identified by match to protein family HMM PF00877.	Secreted cell wall-associated hydrolase; Peptidoglycan endopeptidase that cleaves the bond between D- glutamate and meso-diaminopimelate. Binds and degrades high-molecular weight peptidoglycan. Required for normal separation of daughter cells after cell division and for cell wall integrity (By similarity).	0.472
ABK71832.1	ABK70790.1	MSMEG_3146	MSMEG_6201	Invasin 1; Identified by match to protein family HMM PF00877.	Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793.	0.402
ABK71832.1	ABK70830.1	MSMEG_3146	MSMEG_3477	Invasin 1; Identified by match to protein family HMM PF00877.	Possible inv protein; Identified by match to protein family HMM PF00877.	0.478
ABK71832.1	ABK72323.1	MSMEG_3146	MSMEG_6935	Invasin 1; Identified by match to protein family HMM PF00877.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	0.499
ABK71832.1	ABK72529.1	MSMEG_3146	MSMEG_3148	Invasin 1; Identified by match to protein family HMM PF00877.	Conserved hypothetical protein.	0.427
ABK71832.1	ABK74821.1	MSMEG_3146	MSMEG_2090	Invasin 1; Identified by match to protein family HMM PF00877.	Putative cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.819
ABK71832.1	ABK75913.1	MSMEG_3146	MSMEG_3144	Invasin 1; Identified by match to protein family HMM PF00877.	Putative membrane protein.	0.436
ABK71832.1	ftsE	MSMEG_3146	MSMEG_2089	Invasin 1; Identified by match to protein family HMM PF00877.	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	0.581
ABK71832.1	moxR	MSMEG_3146	MSMEG_3147	Invasin 1; Identified by match to protein family HMM PF00877.	Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	0.423
ABK71832.1	nnrD	MSMEG_3146	MSMEG_1573	Invasin 1; Identified by match to protein family HMM PF00877.	Carbohydrate kinase family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repa [...]	0.416