Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73773.1LAO/AO transport system ATPase; Identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750. (325 aa)    
Predicted Functional Partners:
mutA
methylmalonyl-CoA mutase, small subunit; Identified by match to protein family HMM PF01642; match to protein family HMM TIGR00642.
 
 0.999
ABK74995.1
methylmalonyl-CoA mutase large subunit; Identified by match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641.
 0.999
ABK71062.1
methylmalonyl-CoA mutase C-terminal domain protein; Identified by match to protein family HMM PF02310; match to protein family HMM TIGR00640.
 0.966
ABK76209.1
methylmalonyl-CoA mutase, N-terminus of large subunit; Identified by match to protein family HMM PF01642; match to protein family HMM TIGR00641.
 0.966
ABK74390.1
LAO/AO transport system ATPase; Identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750.
  
  
 
0.945
mce
methylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081.
  
 0.847
ABK73025.1
Conserved hypothetical protein.
       0.621
ABK72002.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
       0.615
ABK73471.1
Conserved hypothetical protein.
       0.562
ABK74100.1
propionyl-CoA carboxylase beta chain; Identified by match to protein family HMM PF01039.
 
   
 0.561
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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