STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70342.1IS1096, tnpA protein; Identified by similarity to GP:150005; match to protein family HMM PF01610. (440 aa)    
Predicted Functional Partners:
ABK76206.1
Soul heme-binding protein.
      
 0.824
ABK69818.1
Conserved hypothetical protein.
      
 0.824
mce
methylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081.
      
 0.805
ABK71997.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
ABK72010.1
Sulfate/thiosulfate import ATP-binding protein CysA; Identified by match to protein family HMM PF00005.
      
 0.535
ABK72729.1
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.490
ABK73109.1
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.490
ABK74401.1
5-carboxymethyl-2-hydroxymuconate delta-isomerase; Identified by match to protein family HMM PF01557.
      
 0.490
ABK73085.1
Conserved hypothetical protein.
      
 0.490
ABK70107.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05305.
      
 0.490
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.