Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cydDATP-binding cassette, subfamily C, bacterial CydD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR02857. (509 aa)    
Predicted Functional Partners:
cydB
Cytochrome D ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203.
 
  
 0.997
ABK70723.1
Cytochrome D ubiquinol oxidase subunit 1; Identified by match to protein family HMM PF01654.
 
  
 0.987
ABK74312.1
Cytochrome bd ubiquinol oxidase, subunit I; Identified by match to protein family HMM PF01654.
 
  
 0.901
ABK71865.1
Cytochrome bd-I oxidase subunit II; Identified by match to protein family HMM PF02322.
 
  
 0.865
ABK75201.1
Integral membrane protein; Identified by match to protein family HMM PF03729.
       0.598
ABK70689.1
Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
   
  
 0.548
ABK74349.1
Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
   
  
 0.548
narI
Respiratory nitrate reductase, gamma subunit; Identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351.
   
  
 0.472
ABK75176.1
Nitrate reductase, alpha subunit; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  
 0.460
ABK75067.1
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
0.437
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.