Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK70723.1Cytochrome D ubiquinol oxidase subunit 1; Identified by match to protein family HMM PF01654. (487 aa)    
Predicted Functional Partners:
cydB
Cytochrome D ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203.
 0.999
ABK71865.1
Cytochrome bd-I oxidase subunit II; Identified by match to protein family HMM PF02322.
 
 0.996
cydD
ATP-binding cassette, subfamily C, bacterial CydD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR02857.
 
  
 0.987
ABK74312.1
Cytochrome bd ubiquinol oxidase, subunit I; Identified by match to protein family HMM PF01654.
  
  
 
0.883
ABK72663.1
Flavohemoprotein; Identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family.
   
  
 0.846
ABK71212.1
Putative glycosyl transferase; Identified by match to protein family HMM PF03033.
   
  
 0.824
ABK75971.1
Identified by match to protein family HMM PF01381.
      
 0.824
ABK74349.1
Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
   
  
 0.770
ABK70689.1
Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
      
 0.766
hybC
Hydrogenase-2, large subunit; Identified by match to protein family HMM PF00374.
   
  
 0.637
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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