Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70751.1Identified by match to protein family HMM PF00005. (261 aa)    
Predicted Functional Partners:
ABK73127.1
ABC-type amino acid transport system, permease component; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 0.982
ABK73708.1
ABC-type amino acid transport system, secreted component; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
 0.965
ABK75561.1
ABC polar amino acid family protein transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 0.931
ABK72437.1
Glutamine-binding periplasmic protein/glutamine transport system permease protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 0.929
ABK75885.1
Glutamate permease; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 0.928
ABK71959.1
Glutamate transporter permease protein GluD; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 0.927
ABK71429.1
ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 0.926
ABK69956.1
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 0.926
ABK75627.1
Glutamine ABC transporter, permease/substrate-binding protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 0.921
ehuC
Ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03004.
 0.920
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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