STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73797.1Conserved hypothetical protein. (282 aa)    
Predicted Functional Partners:
ABK70934.1
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF08028.
  
 
 0.678
ABK72885.1
LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
     
 0.663
ABK75073.1
Conserved hypothetical protein.
  
 
   0.596
ABK74358.1
Conserved hypothetical protein.
  
     0.587
ABK69852.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
     0.569
ABK70488.1
TetR-family protein transcriptional regulator; Identified by match to protein family HMM PF00440.
  
    0.560
ndh
NADH dehydrogenase; Identified by similarity to GB:AAC46302.1; match to protein family HMM PF00070; match to protein family HMM PF07992.
   
  
 0.540
ABK75701.1
Xylulose kinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
  
    0.536
ABK70179.1
Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.
 
  
 0.532
katA
Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.
  
 0.519
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.