STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74058.1Transcriptional regulator; Identified by match to protein family HMM PF04198. (340 aa)    
Predicted Functional Partners:
ABK73256.1
L-xylulose reductase; Identified by match to protein family HMM PF00106.
     
 0.775
eltD
Arabitol-phosphate dehydrogenase; Catalyzes the NAD-dependent reversible oxidation of erythritol and L-threitol. Involved in the degradation pathways of erythritol and L-threitol, that allow M.smegmatis to grow on these compounds as the sole carbon source.
 
   
 0.764
eltP
Maltose/maltodextrin-binding protein; Part of an ABC transporter complex involved in erythritol/L- threitol import. Binds erythritol and L-threitol. Functions in the transport for the degradation pathways of erythritol and L-threitol, that allow M.smegmatis to grow on these compounds as the sole carbon source; Belongs to the bacterial solute-binding protein 1 family.
 
   
 0.698
derK
Dihydroxyacetone kinase; Catalyzes the phosphorylation of D-erythrulose to D- erythrulose-4P. Involved in the degradation pathways of erythritol and D-threitol, that allow M.smegmatis to grow on these compounds as the sole carbon source.
 
  
  0.694
derI1
Ribose 5-phosphate isomerase; Catalyzes the isomerization of D-erythrulose-4P to D- erythrose-4P. Involved in the degradation pathways of erythritol and D- threitol, that allow M.smegmatis to grow on these compounds as the sole carbon source; Belongs to the LacAB/RpiB family.
 
   
 0.628
thpA
Sugar-binding transcriptional regulator, LacI family protein; Part of an ABC transporter complex involved in D-threitol import. Binds D-threitol. Functions in the transport for the degradation pathway of D-threitol, that allows M.smegmatis to grow on this compound as the sole carbon source; Belongs to the bacterial solute-binding protein 2 family.
  
  
 0.565
ABK73005.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
     
 0.554
ABK74533.1
Transporter; Identified by match to protein family HMM PF00528.
     
 0.552
ABK74542.1
Putative sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.
     
 0.549
ABK74836.1
SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
     
 0.549
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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