Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70052.1Transcriptional regulator, MarR family protein; Identified by match to protein family HMM PF01047. (139 aa)    
Predicted Functional Partners:
ABK70617.1
Methyltransferase.
 
   
 0.623
ABK72982.1
3-isopropylmalate dehydrogenase; Identified by match to protein family HMM PF00180.
     
 0.551
ABK70974.1
Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.
     
 0.529
ABK74482.1
PTS system, glucose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826.
  
  
 0.527
ABK76108.1
Membrane transport protein; Identified by match to protein family HMM PF07690.
     
 0.516
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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