Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dapB-4Dihydrodipicolinate reductase, N-terminus domain protein; Identified by match to protein family HMM PF01113; match to protein family HMM PF01408; match to protein family HMM PF02629. (340 aa)    
Predicted Functional Partners:
dapB-2
Dihydrodipicolinate reductase, N-terminus domain protein; Identified by match to protein family HMM PF01113.
  
   
 0.908
ABK72063.1
Dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; Belongs to the DapA family.
     
 0.850
ABK75999.1
Dihydrodipicolinate synthetase; Identified by match to protein family HMM PF00701; Belongs to the DapA family.
     
 0.833
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.
      
 0.768
dapB-5
Dihydrodipicolinate reductase; Identified by match to protein family HMM PF01113.
  
     0.709
dapB-6
Dihydrodipicolinate reductase, N-terminus domain protein; Identified by match to protein family HMM PF01113.
  
     0.684
Rv0926c
Conserved hypothetical protein; Identified by match to protein family HMM PF01113.
  
     0.648
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     
 0.610
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
      
 0.531
ABK73559.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.419
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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