Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK71037.1Oxidoreductase; Identified by match to protein family HMM PF01494. (408 aa)    
Predicted Functional Partners:
ABK69878.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
 
  
 0.810
ABK76062.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.
 
 0.654
ABK70302.1
Methyltransferase type 12; Identified by match to protein family HMM PF05724.
 
 0.638
ABK73982.1
Identified by match to protein family HMM PF03109.
   
 0.608
ABK70997.1
Identified by match to protein family HMM PF03109.
   
 0.608
ABK73637.1
Conserved hypothetical protein.
  
 0.588
ABK72111.1
Conserved hypothetical protein; Probable S-adenosylmethionine-dependent methyltransferase required for the 6-O-methylation of the polysaccharide backbone of 6-O- methylglucosyl lipopolysaccharides (MGLP). Belongs to the methyltransferase superfamily.
  
 0.588
ABK74225.1
SAM-dependent methyltransferase.
  
 0.588
ABK71252.1
Conserved hypothetical protein.
  
 0.588
ABK75041.1
Methyltransferase small domain superfamily protein; Identified by match to protein family HMM PF05175; match to protein family HMM PF05724.
  
 0.588
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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