ABK72847.1 protein (Mycolicibacterium smegmatis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ABK72847.1

Conserved hypothetical protein. (167 aa)

Predicted Functional Partners:

ABK76188.1

0.825

ABK70470.1

0.748

ABK71220.1

0.740

ABK75635.1

0.740

ABK72533.1

0.688

ABK71286.1

0.663

ABK69658.1

0.615

ABK70499.1

0.591

ABK72676.1

0.561

ABK70195.1

0.554

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69658.1	ABK71220.1	MSMEG_6130	MSMEG_1803	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	RsbW protein.	0.501
ABK69658.1	ABK71286.1	MSMEG_6130	MSMEG_1787	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	RsbW protein.	0.469
ABK69658.1	ABK72676.1	MSMEG_6130	MSMEG_1516	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.	0.986
ABK69658.1	ABK72847.1	MSMEG_6130	MSMEG_3325	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	Conserved hypothetical protein.	0.615
ABK69658.1	ABK75635.1	MSMEG_6130	MSMEG_5551	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	Stas domain protein; Identified by match to protein family HMM PF01740.	0.762
ABK69658.1	ABK76188.1	MSMEG_6130	MSMEG_6131	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	Magnesium or manganese-dependent protein phosphatase; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	0.986
ABK70195.1	ABK70499.1	MSMEG_5015	MSMEG_5549	Secreted protein.	Conserved hypothetical protein.	0.531
ABK70195.1	ABK72676.1	MSMEG_5015	MSMEG_1516	Secreted protein.	Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.	0.425
ABK70195.1	ABK72847.1	MSMEG_5015	MSMEG_3325	Secreted protein.	Conserved hypothetical protein.	0.554
ABK70470.1	ABK72847.1	MSMEG_1237	MSMEG_3325	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.748
ABK70499.1	ABK70195.1	MSMEG_5549	MSMEG_5015	Conserved hypothetical protein.	Secreted protein.	0.531
ABK70499.1	ABK71220.1	MSMEG_5549	MSMEG_1803	Conserved hypothetical protein.	RsbW protein.	0.410
ABK70499.1	ABK72847.1	MSMEG_5549	MSMEG_3325	Conserved hypothetical protein.	Conserved hypothetical protein.	0.591
ABK70499.1	ABK75635.1	MSMEG_5549	MSMEG_5551	Conserved hypothetical protein.	Stas domain protein; Identified by match to protein family HMM PF01740.	0.400
ABK71220.1	ABK69658.1	MSMEG_1803	MSMEG_6130	RsbW protein.	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	0.501
ABK71220.1	ABK70499.1	MSMEG_1803	MSMEG_5549	RsbW protein.	Conserved hypothetical protein.	0.410
ABK71220.1	ABK72676.1	MSMEG_1803	MSMEG_1516	RsbW protein.	Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.	0.467
ABK71220.1	ABK72847.1	MSMEG_1803	MSMEG_3325	RsbW protein.	Conserved hypothetical protein.	0.740
ABK71220.1	ABK75635.1	MSMEG_1803	MSMEG_5551	RsbW protein.	Stas domain protein; Identified by match to protein family HMM PF01740.	0.433
ABK71220.1	ABK76188.1	MSMEG_1803	MSMEG_6131	RsbW protein.	Magnesium or manganese-dependent protein phosphatase; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	0.860