Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK72770.1Cis-3-chloroacrylic acid dehalogenase, putative; Identified by match to protein family HMM PF01361. (151 aa)    
Predicted Functional Partners:
ABK75975.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.843
ABK75647.1
Putative transposase; Identified by match to protein family HMM PF00589.
  
     0.674
ABK73570.1
Conserved hypothetical protein.
 
     0.548
ABK73423.1
Membrane protein, MmpL family protein; Identified by match to protein family HMM PF03176.
      
 0.546
ABK74743.1
Identified by match to protein family HMM PF00903.
 
  
 0.530
ABK74785.1
Identified by match to protein family HMM PF00903.
  
  
  0.515
ABK72108.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
   
 0.513
ABK70003.1
MbtG protein.
 
     0.481
ABK71749.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05908.
  
     0.466
ABK74149.1
Transcriptional regulatory protein; Identified by match to protein family HMM PF00440.
  
     0.465
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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