STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74189.1Regulatory protein, TetR; Identified by match to protein family HMM PF00440. (200 aa)    
Predicted Functional Partners:
ABK75376.1
Identified by match to protein family HMM PF01810.
 
  
 0.838
ABK71671.1
Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
    0.667
ABK72624.1
Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965.
 
   
 0.579
ABK70676.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
     0.549
ABK72341.1
Anaerobic dehydrogenase, typically; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.519
ABK75866.1
Molybdopterin oxidoreductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.519
ABK73414.1
enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.
  
 
  0.513
ABK73461.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
    0.498
ABK74920.1
TetR-type transcriptional regulator of sulfur metabolism; Identified by match to protein family HMM PF00440.
  
     0.438
ABK72918.1
Transcriptional regulator, putative; Identified by match to protein family HMM PF00440.
 
   
0.437
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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