STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75376.1Identified by match to protein family HMM PF01810. (208 aa)    
Predicted Functional Partners:
ABK74189.1
Regulatory protein, TetR; Identified by match to protein family HMM PF00440.
 
  
 0.838
ABK75970.1
Identified by match to protein family HMM PF01810.
  
     0.722
ABK75865.1
Identified by match to protein family HMM PF01810.
  
     0.705
ABK71671.1
Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
  
    0.581
ABK73414.1
enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.
  
  
 0.522
ABK72624.1
Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965.
       0.482
ABK75293.1
Identified by match to protein family HMM PF01047; match to protein family HMM PF01978.
 
  
 0.416
ABK70786.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.
  
    0.409
ABK69560.1
GntR-family protein regulator; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.
 
   
 0.402
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.