Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK73193.1Cupin domain protein; Identified by match to protein family HMM PF07883. (139 aa)    
Predicted Functional Partners:
ABK74016.1
Short chain dehydrogenase; Identified by match to protein family HMM PF00106.
 
 
 0.877
ABK76004.1
acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.813
ABK73334.1
Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441.
 
 
 0.807
ABK73598.1
L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
    
 0.773
ABK73818.1
Rhodanese domain protein/cystathionine beta-lyase.
 
    0.697
nthA
Nitrile hydratase, alpha subunit; Identified by match to protein family HMM PF02979; match to protein family HMM TIGR01323.
  
     0.659
ABK72253.1
enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.613
ABK72996.1
Thiocyanate hydrolase gamma subunit; Identified by match to protein family HMM PF02979.
  
     0.583
ABK70807.1
Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
       0.578
ABK74157.1
MaoC like domain protein; Identified by match to protein family HMM PF01575.
  
     0.502
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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