STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73871.1Cytosine permease, putative; Identified by match to protein family HMM PF02133. (453 aa)    
Predicted Functional Partners:
amiF
Formamidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.
  
    0.787
ABK70029.1
glutamyl-tRNA(Gln) amidotransferase subunit A; Identified by match to protein family HMM PF00392; match to protein family HMM PF01425; match to protein family HMM PF07729.
       0.761
ABK75832.1
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.749
ABK75900.1
Conserved hypothetical protein.
  
     0.574
ABK70524.1
HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.
       0.566
ABK72581.1
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.558
ABK76126.1
Conserved hypothetical protein.
  
     0.548
ABK71332.1
Amino acid permease; Identified by match to protein family HMM PF00324.
  
    0.543
ABK74942.1
Guanine deaminase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
 
  
 0.541
ABK76165.1
PAP2 superfamily protein; Identified by match to protein family HMM PF01569.
 
    0.494
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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