Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70138.1Identified by match to protein family HMM PF07690. (483 aa)    
Predicted Functional Partners:
ABK76108.1
Membrane transport protein; Identified by match to protein family HMM PF07690.
  
     0.755
ABK72530.1
Possible drug efflux membrane protein; Identified by match to protein family HMM PF07690.
  
  
 0.727
ABK76044.1
Putative transcriptional regulator, TetR family protein.
  
  
 0.566
ABK69878.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
  
     0.514
ABK73204.1
Polyketide cyclase; Identified by match to protein family HMM PF04199.
   
  
 0.428
ABK72356.1
Drug resistance transporter Bcr/CflA subfamily protein; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710.
  
   
 0.411
ABK74654.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05853.
   
    0.411
ABK71436.1
Membrane protein.
 
   
 0.403
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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