Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70588.1Conserved hypothetical protein. (136 aa)    
Predicted Functional Partners:
ABK74785.1
Identified by match to protein family HMM PF00903.
  
   
 0.839
ABK71747.1
ZbpA protein; Identified by match to protein family HMM PF01575.
      
 0.809
ABK71183.1
Conserved hypothetical protein.
      
 0.809
ABK75538.1
TetR family protein transcriptional regulator; Identified by match to protein family HMM PF00440.
       0.773
ABK74611.1
NAD-dependent epimerase/dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.
       0.544
mspB
Porin; A backup porin induced when MspA, the major porin, is deleted. Probably forms a water-filled channel which favors the permeation of cations. There are about 2400 porins in wild-type, 800 in an mspA deletion and 150 in a double mspA-mspC deletion. A triple mspA- mspC-mspD deletion mutant has low but detectable channel activity. Different conductance values with maxima at 2.3 and 4.6 nanosiemens might be caused by a simultaneous reconstitution of MspB channels into the membrane or by the existence of different MspB conformations. Belongs to the mycobacterial porin (TC 1.B.24) family.
      
 0.540
fabG
3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370.
      
 0.530
ABK75334.1
Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.
      
 0.530
FabG
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
      
 0.519
ABK72602.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
     0.513
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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