Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK76144.1Probable membrane protein. (83 aa)    
Predicted Functional Partners:
ABK70372.1
6-aminohexanoate-cyclic-dimer hydrolase; Identified by match to protein family HMM PF01425.
  
    0.780
ABK74197.1
Putative amino acid decarboxylase, Pyridoxal-dependent protein; Identified by match to protein family HMM PF00282; match to protein family HMM PF01212.
       0.701
ABK74384.1
Conserved hypothetical protein.
       0.553
ABK73360.1
Fructose-bisphosphate aldolase class-I; Identified by match to protein family HMM PF00274.
       0.476
ABK71451.1
Hydrolase, alpha/beta hydrolase fold family protein; Identified by match to protein family HMM PF00561.
       0.426
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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