STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70835.1Transcriptional regulator, XRE family protein; Identified by match to protein family HMM PF01381. (258 aa)    
Predicted Functional Partners:
ABK72277.1
Probable membrane protein.
       0.570
ABK73754.1
Conserved hypothetical protein; Identified by match to protein family HMM TIGR01926.
     
 0.559
ABK72657.1
Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.513
ABK71145.1
Fatty acid hydroxylase; Identified by match to protein family HMM PF04116.
       0.468
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
  
 
 0.440
ABK72215.1
Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.439
ABK71358.1
Metal dependent hydrolase; Identified by match to protein family HMM PF00753.
 
    0.409
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.