STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ehuCEctoine/hydroxyectoine ABC transporter, permease protein EhuC; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03004. (237 aa)    
Predicted Functional Partners:
ehuA
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03005.
 0.997
ehuB
Ectoine/hydroxyectoine ABC transporter solute-binding protein; Identified by match to protein family HMM PF00497; match to protein family HMM TIGR01409; match to protein family HMM TIGR02995.
 
 0.995
ehuD
Ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03003.
 
  
 
0.982
ABK72431.1
Glutamate binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
 0.972
ehuA-2
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03005.
 
 0.922
ABK70491.1
Identified by match to protein family HMM PF00005.
 0.921
ABK70751.1
Identified by match to protein family HMM PF00005.
 0.920
GlnQ
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.920
ABK71953.1
Identified by match to protein family HMM PF00005.
 0.920
ABK73235.1
Glutamine transport ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.
 0.919
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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