STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75522.1Conserved hypothetical protein; Identified by match to protein family HMM PF05976. (671 aa)    
Predicted Functional Partners:
ABK73376.1
Conserved hypothetical protein.
  
     0.768
ABK75418.1
Carbohydrate kinase, PfkB, putative; Identified by match to protein family HMM PF00294.
  
     0.763
ABK76032.1
Conserved hypothetical protein.
 
     0.758
ABK75772.1
Conserved hypothetical protein.
  
     0.757
ABK74862.1
Conserved hypothetical protein.
  
     0.743
ABK70441.1
LprB protein.
 
     0.743
ABK69959.1
Cutinase superfamily protein; Identified by match to protein family HMM PF01083.
  
     0.738
saeA
Hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) but not donor (mc(2)155) strain.
  
     0.734
ABK72151.1
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.733
ABK70249.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
     0.732
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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