STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71312.1Integral membrane protein, putative. (377 aa)    
Predicted Functional Partners:
ABK73790.1
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
  
    0.715
ABK73524.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
  
 0.706
ABK74343.1
Alpha-amylase 3; Identified by match to protein family HMM PF00128.
       0.566
ABK72713.1
Cytidine/deoxycytidylate deaminase, zinc-binding region; Identified by match to protein family HMM PF00383.
       0.565
ABK74109.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061.
  
 
 0.559
ABK75538.1
TetR family protein transcriptional regulator; Identified by match to protein family HMM PF00440.
 
  
 0.496
ABK73103.1
Identified by match to protein family HMM PF00440; match to protein family HMM PF02909.
 
  
 0.464
ABK75019.1
Identified by match to protein family HMM PF03061.
  
    0.463
ABK75251.1
Integral membrane protein; Identified by match to protein family HMM PF03595.
 
     0.456
ABK75060.1
Putative transcription regulator; Identified by match to protein family HMM PF00440.
 
  
 0.411
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.