Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK73790.1TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. (533 aa)    
Predicted Functional Partners:
ribBA
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.815
ABK72970.1
Conserved hypothetical protein.
 
    0.715
ABK71312.1
Integral membrane protein, putative.
  
    0.715
ABK73131.1
Conserved hypothetical protein.
  
     0.692
ABK75057.1
Peptidase S15; Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.
  
     0.684
ABK75162.1
Ethyl tert-butyl ether degradation EthD; Identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118.
  
     0.680
ABK72713.1
Cytidine/deoxycytidylate deaminase, zinc-binding region; Identified by match to protein family HMM PF00383.
       0.666
ABK74343.1
Alpha-amylase 3; Identified by match to protein family HMM PF00128.
       0.666
ABK70593.1
Conserved hypothetical protein.
 
   
 0.661
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.638
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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