STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73369.1Major facilitator family protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (440 aa)    
Predicted Functional Partners:
ABK72067.1
FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070.
  
  
 0.628
ABK73423.1
Membrane protein, MmpL family protein; Identified by match to protein family HMM PF03176.
  
 
 0.530
ABK76124.1
MmpS2 protein; Identified by match to protein family HMM PF05423.
  
    0.511
ABK75839.1
D-serine/D-alanine/glycine transporter; Identified by match to protein family HMM PF00324.
  
  
 0.449
ABK71617.1
Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.
  
  
 0.431
ABK74218.1
Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.
  
  
 0.431
ABK75755.1
Anthranilate dioxygenase reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
    
 0.400
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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