STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75137.1Transcriptional regulator; Identified by match to protein family HMM PF04198. (326 aa)    
Predicted Functional Partners:
dthD
Short chain dehydrogenase; Catalyzes the NAD-dependent reversible oxidation of D- threitol. Involved in the degradation pathway of D-threitol, that allows M.smegmatis to grow on this compound as the sole carbon source. Does not catalyze the oxidation of xylitol, L-sorbitol, and L-sorbose. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.804
ABK70755.1
Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107.
 
  
 0.629
ABK72064.1
Substrate binding protein; Identified by match to protein family HMM PF01547.
 
    0.613
ABK75370.1
Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005.
  
  
 0.537
ABK72360.1
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.530
ABK74742.1
Sorbitol utilization protein SOU2; Identified by match to protein family HMM PF00106.
 
    0.529
ABK71543.1
Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.
  
  
 0.503
thpA
Sugar-binding transcriptional regulator, LacI family protein; Part of an ABC transporter complex involved in D-threitol import. Binds D-threitol. Functions in the transport for the degradation pathway of D-threitol, that allows M.smegmatis to grow on this compound as the sole carbon source; Belongs to the bacterial solute-binding protein 2 family.
  
  
 0.472
eltP
Maltose/maltodextrin-binding protein; Part of an ABC transporter complex involved in erythritol/L- threitol import. Binds erythritol and L-threitol. Functions in the transport for the degradation pathways of erythritol and L-threitol, that allow M.smegmatis to grow on these compounds as the sole carbon source; Belongs to the bacterial solute-binding protein 1 family.
 
    0.433
xypA
Periplasmic sugar-binding proteins; Part of an ABC transporter complex likely involved in xylitol import. Binds xylitol.
  
  
 0.428
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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