Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74758.1Conserved hypothetical protein. (187 aa)    
Predicted Functional Partners:
ABK72090.1
Conserved hypothetical protein.
  
     0.739
ABK71193.1
Conserved hypothetical protein.
  
     0.720
ABK72954.1
Pe family protein.
  
     0.691
ABK72749.1
Conserved hypothetical protein.
  
     0.687
ABK73452.1
Conserved hypothetical protein.
  
     0.672
ABK72305.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
  
     0.654
ABK74560.1
acyl-ACP thioesterase superfamily protein; Identified by match to protein family HMM PF01643.
  
    0.642
ABK70481.1
Nuclear transport factor 2 (NTF2) domain family protein; Identified by match to protein family HMM PF02136.
       0.630
ABK75558.1
Conserved hypothetical protein.
  
     0.609
ABK70706.1
Probable exported protein.
  
     0.608
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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