Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK71786.1Conserved hypothetical protein. (442 aa)    
Predicted Functional Partners:
ABK69675.1
Serine/threonine specific protein phosphatase; Identified by match to protein family HMM PF00149.
  
     0.610
ABK74410.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.565
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.550
lprG
LprG protein; Probably helps membrane protein MSMEG_3069/MSMEI_2992 (P55) transport triacylglycerides (TAG) across the inner cell membrane into the periplasm and probably ultimately to the outer membrane (By similarity). Required for MSMEG_3069/MSMEI_2992 export activity. Export of ethidium bromide by MSMEG_3069/MSMEI_2992 can be complemented by the equivalent operon from M.tuberculosis (lprG-Rv1410c). Belongs to the LppX/LprAFG lipoprotein family.
  
     0.538
ABK73760.1
Conserved hypothetical protein.
 
     0.519
ABK71803.1
Putative monooxygenase.
  
 
  0.498
ABK75214.1
Diguanylate cyclase (ggdef) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
    0.483
ABK72764.1
Spfh domain/band 7 family protein, putative; Identified by match to protein family HMM PF01145.
  
     0.458
ABK71989.1
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.450
ABK72384.1
Conserved hypothetical protein.
 
     0.449
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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