Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pqqBCoenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. (300 aa)    
Predicted Functional Partners:
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
  
 0.990
ABK74139.1
Bifunctional coenzyme PQQ synthesis protein C/D; Identified by match to protein family HMM PF05402.
 
  
 0.978
pqqE
Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).
 
  
 0.971
ABK72273.1
Alcohol dehydrogenase; Identified by match to protein family HMM PF01011; match to protein family HMM TIGR03075.
 
  
 0.927
ABK71109.1
Sodium/calcium exchanger protein; Identified by match to protein family HMM PF01699.
 
    0.867
ABK69546.1
Recombination activating protein 1.
       0.773
ABK73068.1
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
  
 0.594
ABK75599.1
Conserved hypothetical protein.
 
   
 0.572
pqqA
Coenzyme PQQ biosynthesis protein A; Identified by match to protein family HMM TIGR02107.
       0.554
ABK75388.1
L-sorbosone dehydrogenase.
 
   
 0.503
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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