ABK71513.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK71513.1

Conserved hypothetical protein. (68 aa)

Predicted Functional Partners:

ABK71721.1

0.925

ABK74298.1

0.925

nadK

0.921

ABK71205.1

0.879

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71205.1	ABK71513.1	MSMEG_3751	MSMEG_3752	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Conserved hypothetical protein.	0.879
ABK71205.1	ABK71721.1	MSMEG_3751	MSMEG_3753	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460.	0.867
ABK71205.1	ABK74298.1	MSMEG_3751	MSMEG_3754	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	TPR-repeat-containing protein.	0.873
ABK71205.1	nadK	MSMEG_3751	MSMEG_3750	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NADkinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.990
ABK71513.1	ABK71205.1	MSMEG_3752	MSMEG_3751	Conserved hypothetical protein.	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	0.879
ABK71513.1	ABK71721.1	MSMEG_3752	MSMEG_3753	Conserved hypothetical protein.	Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460.	0.925
ABK71513.1	ABK74298.1	MSMEG_3752	MSMEG_3754	Conserved hypothetical protein.	TPR-repeat-containing protein.	0.925
ABK71513.1	nadK	MSMEG_3752	MSMEG_3750	Conserved hypothetical protein.	Inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NADkinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.921
ABK71721.1	ABK71205.1	MSMEG_3753	MSMEG_3751	Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460.	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	0.867
ABK71721.1	ABK71513.1	MSMEG_3753	MSMEG_3752	Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460.	Conserved hypothetical protein.	0.925
ABK71721.1	ABK74298.1	MSMEG_3753	MSMEG_3754	Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460.	TPR-repeat-containing protein.	0.991
ABK71721.1	nadK	MSMEG_3753	MSMEG_3750	Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460.	Inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NADkinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.913
ABK74298.1	ABK71205.1	MSMEG_3754	MSMEG_3751	TPR-repeat-containing protein.	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	0.873
ABK74298.1	ABK71513.1	MSMEG_3754	MSMEG_3752	TPR-repeat-containing protein.	Conserved hypothetical protein.	0.925
ABK74298.1	ABK71721.1	MSMEG_3754	MSMEG_3753	TPR-repeat-containing protein.	Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460.	0.991
ABK74298.1	nadK	MSMEG_3754	MSMEG_3750	TPR-repeat-containing protein.	Inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NADkinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.929
nadK	ABK71205.1	MSMEG_3750	MSMEG_3751	Inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NADkinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	0.990
nadK	ABK71513.1	MSMEG_3750	MSMEG_3752	Inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NADkinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	Conserved hypothetical protein.	0.921
nadK	ABK71721.1	MSMEG_3750	MSMEG_3753	Inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NADkinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460.	0.913
nadK	ABK74298.1	MSMEG_3750	MSMEG_3754	Inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NADkinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	TPR-repeat-containing protein.	0.929