Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK70924.1Transcriptional regulator, IclR family protein; Identified by match to protein family HMM PF01614. (251 aa)    
Predicted Functional Partners:
ABK76135.1
PfkB-family protein carbohydrate kinase; Identified by match to protein family HMM PF00294.
 
  
 0.888
ABK76161.1
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.812
ABK71870.1
Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.
 
    0.770
ABK71104.1
Urea amidolyase; Identified by match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM TIGR00724.
  
  
 0.719
eda-2
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182.
 
   
 0.663
ABK72097.1
D-aminoacylase; Identified by match to protein family HMM PF07908; match to protein family HMM PF07969.
  
    0.582
ABK75676.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01266.
      
 0.573
ABK73220.1
D-amino acid deaminase.
  
    0.566
ABK73370.1
Identified by match to protein family HMM PF01575.
  
 
 0.563
ABK71539.1
Beta-ketothiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.528
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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