Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72697.1Conserved hypothetical protein; Identified by match to protein family HMM PF01796. (149 aa)    
Predicted Functional Partners:
ABK74235.1
Lipid-transfer protein.
 
 0.997
ABK74714.1
Lipid-transfer protein.
 
 0.960
ABK69790.1
Lipid-transfer protein.
 
 0.956
ABK72364.1
Putative thiolase; Identified by match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.861
ABK73835.1
Putative thiolase; Identified by match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.860
ABK70372.1
6-aminohexanoate-cyclic-dimer hydrolase; Identified by match to protein family HMM PF01425.
     
 0.826
ABK69621.1
6-aminohexanoate-cyclic-dimer hydrolase; Identified by match to protein family HMM PF01425; Belongs to the amidase family.
     
 0.826
ABK75469.1
acetyl-CoA acetyltransferase.
 
 0.799
ABK74844.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01796.
 
 0.756
ABK75565.1
acetyl-CoA acetyltransferase.
 
 0.732
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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