Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74724.1Conserved hypothetical protein. (161 aa)    
Predicted Functional Partners:
ABK70290.1
Conserved hypothetical protein.
  
    0.880
ABK71792.1
Conserved hypothetical protein.
  
    0.863
ABK73214.1
ATPase family protein associated with various cellular activities (AAA); Identified by match to protein family HMM PF01882; match to protein family HMM PF07726; match to protein family HMM PF07728.
       0.861
ABK75482.1
Alpha-ketoglutarate-dependent taurine dioxygenase; Identified by match to protein family HMM PF02668.
  
    0.550
cobG
precorrin-3B synthase; Identified by match to protein family HMM PF03460; match to protein family HMM TIGR02435.
       0.513
ABK72513.1
Cobalamin biosynthesis protein cobIJ; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; match to protein family HMM TIGR01467; Belongs to the precorrin methyltransferase family.
       0.508
ABK70641.1
precorrin-8X methylmutase; Identified by match to protein family HMM PF02570.
       0.507
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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