ABK74851.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK74851.1

Hydrolase; Identified by match to protein family HMM PF00561. (293 aa)

Predicted Functional Partners:

ABK71909.1

0.680

ABK70103.1

0.677

ABK75822.1

0.666

ABK72302.1

0.657

ABK69734.1

0.642

ABK71131.1

0.612

ABK70856.1

0.603

ABK71854.1

0.587

ABK72937.1

0.574

ABK74685.1

0.574

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69734.1	ABK70103.1	MSMEG_2913	MSMEG_4757	Hydrolase; Identified by match to protein family HMM PF00561.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.677
ABK69734.1	ABK70856.1	MSMEG_2913	MSMEG_2036	Hydrolase; Identified by match to protein family HMM PF00561.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.467
ABK69734.1	ABK71854.1	MSMEG_2913	MSMEG_5739	Hydrolase; Identified by match to protein family HMM PF00561.	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.587
ABK69734.1	ABK71909.1	MSMEG_2913	MSMEG_3289	Hydrolase; Identified by match to protein family HMM PF00561.	Gp61 protein; Identified by match to protein family HMM PF00561.	0.570
ABK69734.1	ABK72302.1	MSMEG_2913	MSMEG_2777	Hydrolase; Identified by match to protein family HMM PF00561.	Alpha/beta hydrolase fold; Identified by match to protein family HMM PF00561.	0.581
ABK69734.1	ABK74851.1	MSMEG_2913	MSMEG_3891	Hydrolase; Identified by match to protein family HMM PF00561.	Hydrolase; Identified by match to protein family HMM PF00561.	0.642
ABK69734.1	ABK75822.1	MSMEG_2913	MSMEG_6314	Hydrolase; Identified by match to protein family HMM PF00561.	Haloalkane dehalogenase 1; Identified by match to protein family HMM PF00561.	0.509
ABK70103.1	ABK69734.1	MSMEG_4757	MSMEG_2913	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Hydrolase; Identified by match to protein family HMM PF00561.	0.677
ABK70103.1	ABK70856.1	MSMEG_4757	MSMEG_2036	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.677
ABK70103.1	ABK71131.1	MSMEG_4757	MSMEG_4707	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Non-heme bromoperoxidase BPO-A2; Identified by match to protein family HMM PF00561.	0.677
ABK70103.1	ABK71854.1	MSMEG_4757	MSMEG_5739	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.999
ABK70103.1	ABK71909.1	MSMEG_4757	MSMEG_3289	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Gp61 protein; Identified by match to protein family HMM PF00561.	0.677
ABK70103.1	ABK72302.1	MSMEG_4757	MSMEG_2777	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Alpha/beta hydrolase fold; Identified by match to protein family HMM PF00561.	0.677
ABK70103.1	ABK74851.1	MSMEG_4757	MSMEG_3891	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Hydrolase; Identified by match to protein family HMM PF00561.	0.677
ABK70103.1	ABK75822.1	MSMEG_4757	MSMEG_6314	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Haloalkane dehalogenase 1; Identified by match to protein family HMM PF00561.	0.677
ABK70856.1	ABK69734.1	MSMEG_2036	MSMEG_2913	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Hydrolase; Identified by match to protein family HMM PF00561.	0.467
ABK70856.1	ABK70103.1	MSMEG_2036	MSMEG_4757	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.677
ABK70856.1	ABK71854.1	MSMEG_2036	MSMEG_5739	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.587
ABK70856.1	ABK71909.1	MSMEG_2036	MSMEG_3289	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Gp61 protein; Identified by match to protein family HMM PF00561.	0.721
ABK70856.1	ABK74851.1	MSMEG_2036	MSMEG_3891	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Hydrolase; Identified by match to protein family HMM PF00561.	0.603